This list was last updated on 1st of March 2023
103 publications in total, 89 in peer-reviewed journals, and two patents
103 - Turzynski V, Griesdorn L, Moraru C, Soares A, Simon SA, Stach TL, Rahlff J, Esser SP and Probst AJ (2023). Virus-host dynamics in archaeal groundwater biofilms and the associated bacterial community composition. bioRxiv 526798
102 - Stach TL, Sieber G, Shah M, Simon SA, Soares AR, Bornemann TLV, Plewka J, Künkel J, Becker C, Meyer F, Boenigk J and Probst AJ (2023). Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater. accepted at MicrobiologyOpen
101 - Pápai M, Benedek T, Táncsics A, Bornemann TLV, Plewka J, Probst AJ, Hussein D, Maroti G, Menashe O and Kriszt B (2023). Selective enrichment, identification, and isolation of diclofenac, ibuprofen, and carbamazepine degrading bacteria from a groundwater biofilm. Environ Sci Pollut Res (2023).
100 - Simon SA, Schmidt K,Griesdorn L, Soares AR, Bornemann TLV, and Probst AJ (2023). Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction. bioRxiv 527874
99 - Bornemann TLV, Esser SP, Stach TL, Burg T, and Probst AJ (2023). uBin – a manual refining tool for metagenomic bins designed for educational purposes. Environmental Microbiology, 1-7
98 - Adam PS, Kolyfetis GE, Bornemann TLV, Vorgias CE, and Probst AJ (2021). Genomic remnants of ancestral hydrogen and methane metabolism in Archaea drive anaerobic carbon cycling. Science Advances 8 (44), eabm9651
97 - Hedlund BP, Chuvochina M, Hugenholtz P, Konstantinidis KT, Murray AE, Palmer M, Parks DH, Probst AJ, Reysenbach A-L, Rodriguez-R LM, Rossello-Mora R, Sutcliffe IC, Venter SN, Whitman WB (2022). SeqCode: a nomenclatural code for prokaryotes described from sequence data. Nature microbiology 7 (10), 1702-1708
96 - Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, Chen IM, Ivanova N, Allen LZ, Paez-Espino D, Bryant DA, Bhaya D, RNA Virus Discovery Consortium, Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U (2022). Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell, 185(21), 4023-4037.e18 as part of the RNA Virus Discovery Consortium
95 - Whitman WB, Chuvochina M, Hedlund BP, Hugenholtz P, Konstantinidis KT, Murray A, Palmer M, Parks DH, Probst AJ, Reysenbach A-L, Rodriguez-R LM, Rossello-Mora R, Sutcliffe I, Venter SN (2022). Development of the SeqCode: a proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type. Systematic and Applied Microbiology, 126305
94 - Overholt WA, Trumbore S, Xu X, Bornemann TLV, Probst AJ, Krüger M, Herrmann M, Thamdrup B, Bristow LA, Taubert M, Schwab VF, Hölzer M, Marz M, Küsel K (2022). Carbon fixation rates in groundwater similar to those in oligotrophic marine systems. Nature Geoscience 15 (7), 561-567
93 - Rahlff J, Bornemann TLV, Lopatina A, Severinov K, Probst AJ (2022). Host-associated phages disperse across the extraterrestrial analogue Antarctica. Applied and Environmental Microbiology, e00315-22
92 - Meyer BH, Adam PS, Wagstaff BA, Kolyfetis GE, Probst AJ, Albers SV, Dorfmueller H (2022). Agl24 is an ancient archaeal homolog of the eukaryotic N-glycan chitobiose synthesis enzymes. Elife 11, e67448
91 - Bornemann TLV, Adam PS, Probst AJ (2022). Reconstruction of Archaeal Genomes from Short-Read Metagenomes. Book Archaea, 487-527
90 - Adam PS, Bornemann TLV, Probst AJ (2022). Progress and Challenges in Studying the Ecophysiology of Archaea. Book Archaea, 469-486
89 - Rahlff J, Esser SP, Plewka J, Heinrichs ME, Soares A, Scarchilli C, Grigioni P, Wex H, Giebel H-A, Probst AJ (2022). Heads in the clouds: marine viruses disperse bidirectionally along the natural water cycle. bioRxiv 497027
88 - da Rocha UN, Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Stefanic P, Bicalho MF, Correa FB, Basturk MN, Fousekis E, Barbosa LMV, Plewka J, Probst AJ, Baldrian P, Stadler PF (2022). MuDoGeR: Multi-Domain Genome Recovery from metagenomes made easy. bioRxiv 496983
87 - Monsees I, Turnzynski V, Esser SP, Soares A, Timmermann L, Weidenbach K, Banas J, Kloster M, Beszteri B, Schmidt-Streit R, Probst AJ (2022) Label-free Raman microspectroscopy for identifying prokaryotic virocells. bioRxiv 461451 (differing title). mSystems 7 (1), e01505-21
86 - Chaudhari NM, Overholt WA, Figueroa-Gonzalez PA, Taubert M, Bornemann TLV, Probst AJ, Hölzer M, Marz M, Küsel K (2022). The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers. Environmental Microbiome, 16(1), 1-18
85 - Bornemann TLV , Adam PS, Turzynski V, Schreiber U, Figueroa-Gonzalez PA, Rahlff J, Köster D, Schmidt TC, Schunk R, Krauthausen B, Probst AJ (2022). Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing. bioRxiv 980714 (differing title). Nature Communications 13(1), 1-12
84 - Turzynski V, Monsees I, Moraru C, Probst AJ (2021). Imaging techniques for detecting prokaryotic viruses in environmental samples. Viruses 13(11), 2126
83 - Hwang Y, Schulze-Makuch D, Arens FL, Saenz JS, Adam PS, Bornemann TLV, Airo A, Schloter M, and Probst AJ (2020). Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core. bioRxiv 208546 (differing title). Microbiome 9 (1), 1-17
82 - Yang S, Liebner S, Walz J, Knoblauch C, Bornemann TLV, Probst AJ, Wagner D, Jetten MSM, in ‘t Zandt MH (2021). Effects of long-term anoxiv warming scenario on microbial community structure and functional potential of permafrost-affected soil. Permafrost and Periglacial Process, 32(4), 641-656
81 - Benedek T, Szentgyörgyi F, Gergocs V, Menashe O, Figueroa-Gonzalez PA, Probst AJ, Kriszt B, Tancsics A (2021). Potential for Variovorax paradoxus isolate BFB1_13 for bioremediation of BTEX contaminated sites. AMB Express 11, 1-17
80 - Starr EP, Shi S, Blazewicz SJ, Koch BJ, Probst AJ, Hungate BA, Pett-Ridge J, Firestone MK, Banfield JF (2021). Stable-isotope-informed, genome-resolved metagenomics uncovers potential cross-kingdom interactions in rhizosphere soil. mSphere 6(5), e00085-21
79 - Kieft K, Beister AM, Huss P, Linz AM, Zanetakos E, Zhou Z, Rahlff J, Esser SP, Probst AJ, Raman S, Roux S, Anantharaman K (2021). Virus-associated organosulfur metabolism in human and environmental systems. bioRxiv 42518. Cell Reports 36, 109471
78 - Rahlff J, Turzynski V, Esser SP, Monsees I, Bornemann TLV, Figueroa-Gonzalez PA, Schulz F, Woyke T, Klingl A, Moraru C, and Probst AJ (2020). Lytic archaeal viruses infect abundant primary producers in Earth’s crust. bioRxiv 215848 (differing title). Nature Communications 12, 4642
77 - Hwang Y, Rahlff J, Schulze-Makuch D, Schloter M, Probst AJ (2021). Diverse viruses carrying genes for microbial extremotolerance in the Atacama Desert hyperarid soil. mSystems 6(3), e00385-21
76 - Schulze-Makuch D, Lipus D, Arens FL, Baqué M, Bornemann TLV, deVere J-P, Flury M, Frösler J, Heinz J, Hwang Y, Kounaves SP, Mangelsdorf K, Meckenstock RU, Pannekens M, Probst AJ, Sáenz JS, Schirmack J, Schloter M, Schmitt-Kopplin P, Schneider B, Uhl J, Vestergaard G, Valenzuela B, Zamorano P, Wagner D (2021). Microbial hotspots in lithic microbhabitats inferred from DNA fraction and metagenomics in the Atacama Desert. Microorganisms 9 (5), 1038
75 - Probst AJ, Klingl A, Boenigk J, Schlechter J, Wirth R, Flemming HC (2021). Spezielle Physiologie der Prokaryoten. Boegnik Hrsg., Biologie, Spektrum Verlag, 547-580
74 - Heise J, Müller H, Probst AJ, Meckenstock RU (2021). Ammonium removal in aquaponics indicates participation of Comammox Nitrospira. Current microbiology, 78(3), 894-903
73 - Lang A, Czech L, Probst AJ (2020). Die Leiden der Jungen Wissenschaftler. BIOspektrum 26 (5), 572-576
72 - Rahlff J, Giebel HA, Wirl O, Probst AJ, Herlemann DPR (2020). Overlooked diversity of ultramicrobial minorities at the air-sea interface. Atmosphere 11(11), 1214.
71 - Figueroa-Gonzalez PA, Bornemann TLV, Adam PS, Plewka J, Révész F, von Hagen CA, Táncsics A, and Probst AJ (2020). Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities. Frontiers in Microbiology 11, 3343.
70 - Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, Whitman WB, Acinas SG, Amann RI, Anantharaman K, Armengaud J, Baker BJ, Barco RA, Bode HB, Boyd ES, Brady CL, Carini P, Chain PSG, Colman DR, DeAngelis KM, de los Rios MA, Estrada-de los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard D, Girguis PR, Hentschel U, Hollibaugh JT, Hug LA, Inskeep WP, Ivanova EP, Klenk HP, Li WJ, Lloyd KG, Löffler FE, Makhalanyane TP, Moser DP, Nunoura T, Palmer M, Parro V, Pedrós-Alió C, Probst AJ, Smits THM, Steen AD, Steenkamp ET, Spang A, Stewart FJ, Tiedje JM, Vandamme P, Wagner M, Wang FP, Hedlund BP and Reysenbach AL (2020). Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology 5: 987-994
69 - Al-Shayeb B, Sachdeva R, Chen L-X, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, Matheus-Carnevali P, Sun C, Goltsman DSA, Borton MA, Nelson TC, Kantor R, Jaffe AL, Keren R, Farag IF, Lei S, Finstad K, Amundson RA, Anantharaman K, Zhou J, Probst AJ, Power ME, Tringe SG, Li W-J, Wrighton K, Harrison S, Morowitz M, Relman DA, Doudna JA, Lehours A-C, Warren L, Cate JHD, Santini JM, Banfield JF (2020). Clades of huge phage from across Earth’s ecosystems. bioRxiv 572362. Nature 578 (7795): 425-431
68 - Probst AJ, Elling FJ, Castelle CJ, Zhu Q, Elvert M, Birarda G, Holman HY, Lane KR, Ladd B, Ryan MC, Woyke T, Hinrichs KU, Banfield JF (2020). Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. bioRxiv 465690. ISME J 14: 1547-1560
67 - Nuy JK, Bornemann T, Beisser D, Probst AJ, Boenigk J (2020). Comparing Community Measures in Lake Microbial Ecology: Metagenomes and Metatranscriptomes and Amplicons, oh my! Research Square, https://doi.org/10.21203/rs.3.rs-29111/v1
66 - Probst AJ (2020). Zusammen in Dunkelheit—mikrobielle Interaktionen in der Erdkruste. Biospektrum 26(3), 255-258
65 - Geesink P, Wegner CE, Probst AJ, Herrmann M, Dam HT, Kaster AK, Küsel K (2019). Genome-inferred spatio-temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater. Environ Microbiol 22(2): 726-737
64 - Müller H, Marozava S, Probst AJ, Meckenstock RU (2019). Groundwater cable bacteria conserve energy by sulfur disproportionation. ISME J 14(2):623-634
63 - Révész F, Figueroa-Gonzalez PA, Probst AJ, Kriszt B, Banerjee S, Szoboszlay S, Maróti G, Táncsics A (2019). Microaerobic conditions caused the overwhelming dominance of Acinetobacter spp. and the marginalization of Rhodococcus spp. in diesel fuel/crude oil mixture-amended enrichment cultures. Arch Microbiol 202(2): 329-343
62 - Monsees I, Klingl A, and Probst AJ (2019). Kleine Zellen, große Wirkung – Bakterien der Candidate Phyla Radiation. Biospektrum
61 - Probst AJ and Vaishampayan P (2019). Are we there yet? Understanding interplanetary microbial hitchhikers using molecular methods. Current Issues in Molecular Biology 35: 33-52
60 - Schwank K, Bornemann TLV, Dombrowski N, Spang A, Banfield JF, and Probst AJ (2019). An archaeal symbiont-host association from the deep terrestrial subsurface. ISME J 13(8): 2135-2139
59 - Bourma-Gregson K, Olm MR, Probst AJ, Anantharaman K, Power ME, and Banfield JF (2019). Microbial diversity and metabolic potential in cyanotoxin producing cyanobacterial mats throughout a river network. bioRxiv 294421. ISME J 13(6): 1618-1634
58 - Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, and Gu JD (2018). Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages. Microbiome 6 (1): 102
57 - Castelle C, Brown CT, Anantharaman K, Probst AJ, Huang RH, and Banfield JF (2018). Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations. Nature Reviews in Microbiology 16 (10): 629-645
56 - Sieber CMK, ProbstAJ, Sharon I, Sharrar A, Thomas BC, Hess M, Tringe SG, and Banfield JB (2016/17). Recovery of genomes from metagenoms via a dereplication aggregation and scoring strategy. bioRxiv, 107789. Nature Microbiol, 3 (7): 836-843
55 - Nocker A, Shah M, Dannenmann B, Schulze-Osthoff K, Wingender J, and Probst AJ (2018). Assessment of UV-C-induced water disinfection by differential PCR-based quantification of bacterial DNA damage. J Microbiol Met, pp. 89-95, Vol. 149
54 - Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MA, and Banfield JF (2018). Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially processed plant derived carbon. bioRxiv 211649. Microbiome 122, Vol. 6 (1)
53 - West P, Probst AJ, Grigoriev I, Thomas BC, and Banfield JF (2017). Genome reconstruction of Eukaryotes from complex natural microbial communities. Genome Research, 569-580, Vol. 28 (4)
52 - Probst AJ and Jillian Banfield (2018). Homologous recombination and transposon propagation shapes the population structure of an organism from the deep subsurface with minimal metabolism. Gen Biol Evol, evy067 - authors contributed equally
51 - Schulze-Makuch D., Wagner d, Kounaves SP, Mangelsdorf K, Devine KG, de Vera JP, Schmitt-Kopplin P, Grossart HP, Parro V, Kaupenjohann M, Galy A, Schneider B, Airo A, Froesler J, Davila A, Arens F, Caceres L, Cornejo S, Carrizo D, Dartnell L, DiRuggiero J, Flury M, Ganzert L, Gessner M, Grathwohl P, Guan L, Heinz J, Hess M, Keppler F, Maus D, McKay CP, Meckenstock RU, Montgomery W, Oberlin EA, Probst AJ, Saenz J, Sattler T, Schirmack J, Sephton MA, Schloter M, Uhl J, Valenzuela B, Vesergaard G, Wörmer L, and Zamorano P (2017). A Transitory Microbial Habitat in the Hyperarid Atacama Desert. PNAS, Vol. 115 (11) 2670-2675
50 - Probst AJ, Ladd B, Jarret J, Geller-McGrath DE, Sieber CMK, Emerson J, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, and Banfield JF (2018). Differential depth-based distribution of microbial function and novel symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. Nature Microbiol, 328-336, Vol. 3
49 - Marozava S, Mouttaki H, Müller H, Laban NA, Probst AJ, and Meckenstock RU (2018). Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture. Biodegradation, Vol. 29 (1) 23-39
48 - Probst AJ, Hu P, Sun CL, Dubinsky EA, Sieber CMK, Banfield JF, and Andersen GL (2017). Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill. PNAS 114(43): E8950-E8952
47 - Finstad KM, Probst AJ, Thomas BC, Andersen GL, Piceno YM, Demergasso C, Amundson RG, and Banfield JB (2016). Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics. Frontiers in Microbiol, Vol. 8 1435
46 - Hu P, Dubinksy EA, Probst AJ, Wang J, Sieber MKC, Tom LM, Gardinali P, Banfield JF, and Andersen GL (2016). Experimental reproduction of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon-degraders. PNAS, Vol. 114 (28):7432–7437
45 - Hernsdorf AW, Amano Y, Miyakawa K, Ise K, Suzuki Y, Anantharaman K, Probst AJ, Burstein D, Thomas BC, and Banfield JF (2017). Potential for microbial H2 and metal transformations in deep terrestrial subsurface sediments: relevance for nuclear waste disposal. ISME J, Vol. 11 1915–1929
44 - Moissl-Eichinger C, Probst AJ, Birarda G, Auerbach A, Koskinen K, Wolf P, and Holman H-Y (2017). Human age and skin physiology shape diversity and abundance of Archaea on skin. Scientific Reports, 7, 4039
43 - Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, and Banfield JB (2017). New CRISPR-Cas systems from uncultivated microbes. Nature, 237-241, Vol. 524(7640)
42 - Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, and Banfield JF (2016). Proteomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ, e2687, Vol. 4
41 - Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, and Banfield JF (2016). Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nature Commun, 13219, Vol. 7
40 - Bird JT, Baker BJ, Probst AJ, Podar M, and Lloyd KG (2016). Culture independent genomic comparisons reveal environmental adaptations for Altiarchaeales. Frontiers in Microbiol, 1221, Vol. 7
39 - Probst AJ, Castelle C, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Emerson JB, Thomas BC, and Banfield JF (2016). Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations. Env Microbiol, 459-474, Vol. 19(2)
38 - Tischler C, Weikl F, Probst AJ, Stnadl M, Heinrich J, and Pritsch K (2016). Urban dust microbiome: Impact on later atopy and wheezing. Environmental Health Perspectives, Epub ahead of print
37 - Mayer T, Blachowicz A, Probst AJ, Vaishampayan P, Checkinska A, Swarmer T, de Leon P, and Venkateswaran K (2016). Microbial succession in an inflated Lunar/Mars analog habitat during a 30-day occupation by student astronauts. Microbiome, 22, Vol. 4
36 - Weikl F, Tischer C, Probst AJ, Heinrich J, Pritsch K (2016). Fungal and bacterial communities in indoor dust follow different environmental determinants. PLoS One, e0154131
35 - Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman D, Finstad KM, Amundson R, Thomas BC, and Banfield JF (2015). A new view of the tree of life. Nature Microbiol, ArtNo 16048
34 - Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, and Banfield FJ (2016). Major bacterial lineages are essentially devoid of CRISPR-Cas viral defense systems. Nature Commun, 10613, Vol. 7
33 - Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Kenneth WH, Banfield JF (2016). Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. PeerJ, e1607
32 - Weinmaier T, Probst AJ, LaDuc MT, Ciobanu D, Cheng J-F, Ivanova N, Rattei T, Vaishampayan P (2015). A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses. Microbiome, 62, Vol. 3
31 - Checinska A, Probst AJ, Vaishampayan P, White JR, Kumar D, Stepanov VG, Fox GE, Nilsson HR, Pierson DL, Perry J, Venkateswaran K (2015). Microbiomes of the dust particles collected from the international space station and spacecraft assembly facilities. Microbiome, 50, Vol. 3
30 - Mahnert A, Vaishampayan P, Probst AJ, Moissl-Eichinger C, Venkateswaran K, and Berg G (2015). Cleanroom maintenance significantly reduces abundance but not diversity of indoor microbiomes. PLoS One, e0134848
29 - Perras AK, Daum B, Ziegler C, Takahashi LK, Ahmed M, Wanner G, Klingl A, Leitinger G, Kolb-Lenz D, Gribarldo S, Auerbach A, Mora M, Probst AJ, Bellack A, Moissl-Eichinger C (2015). S-layer at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence. Frontiers in Microbiol, 543, Vol. 6
28 - Probst AJ and Moissl-Eichinger C (2015). “Altiarchaeales”: Uncultivated Archaea from the Subsurface. Life, pp. 1381–1395, Vol 5
27 - Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, and Banfield JF (2015). Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. ISME J, doi:10.1038
26 - Probst AJ, Weinmaier T, DeSantis TZ, SantoDomingo J, and Ashbolt N (2015). New perspectives on microbial community distortion after whole-genome amplification. PLoS One, e0124158
25 - Moissl-Eichinger C, Auerbach AK, Probst AJ, Mahnert A, Tom L, Piceno Y, Andersen GL, Venkateswaran K, Rettberg P, Barczyk S, Pukall R, Berg G (2015). Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments. Scientific Reports, 9156, Vol. 5
24 - Probst AJ, Lum PY, John B, Dubinsky EA, Piceno YM, Tom LM, Andersen GL, and DeSantis TZ (2015). Microarray of 16S rRNA gene probes for quantifying population differences across microbiome samples. In: Microarrays: Current Technology, Innovations and Applications. Editor: Zhili He, Horizon Scientific Press and Caister Academic Press, Chapter 5, pp. 99–119
23 - Probst AJ (2015). Neue Archaeen aus der Tiefe setzen Treibhausgas um. BioSpektrum, p. 351, Vol 21
22 - Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs K-U, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield JF, and Moissl-Eichinger C (2014). Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nature Commun, 5497, Vol 5
21 - Perras AK, Wanner G, Klingl A, Mora M, Auerbach AK, Heinz V, Probst AJ, Huber H, Rachel R, Meck S, Moissl-Eichinger C (2014). Grappling archaea: ultrastructural analyses of an uncultivated, cold-loving archaeon, and its biofilm. Frontiers in Microbiol, 397, Vol. 5
20 - Probst AJ, Birarda B, Holman H-YN, DeSantis TZ, Wanner G, Andersen GL, Perras AK, Meck S, Völkel J, Bechtel HA, Wirth R, and Moissl-Eichinger C (2014). Coupling genetic and chemical microbiome profiling reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms that are Dominated by the Same Archaeal Species. PLoS One, e99801, Vol. 9
19 - Miezeiewski M, Schnaufer T, Muravsky M, Wang S, Caro-Aguilar I, Secore S, Thiriot DS, Hsu C, Rogers I, DeSantis TZ, Kuczynski J, Probst AJ, Chehoud C, Steger R, Warrington J, Bodmer J-L, Hinrichs JH (2014). An in virto culture model to study the dynamics of colonic microbiota in syrian golden hamster and their susceptibility to infection with Clostridium difficile. ISME J, 321–332, Vol. 9, No. 2
18 - Bauermeister A, Mahnert A, Auerbach A, Böker A, Flier N, Weber C, Probst AJ, Moissl-Eichinger C, Haberer K (2014). Quantification of encapsulated bioburden in spacecraft polymer materials by cultivation-dependent and molecular methods. PLoS One, e94265, Vol. 9
17 - Krebs JE, Vaishampayan P, Probst AJ, Tom LM, Marteinsson VT, Andersen GL, and Venkateswaran K (2014). Microbial community structures of novel icelandic hot spring systems revealed by PhyloChip G3 analysis. Astrobiology, pp. 220-240, Vol. 14, No. 3
16 - Moissl-Eichinger C, Pukall R, Probst AJ, Stieglmeier M, Schwendner P, Mora M, Barczyk S, Bohmeier M, and Rettberg P (2013). Lessons Learned from the Microbial Analysis of the Herschel Spacecraft during Assembly, Integration, and Test Operations. Astrobiology, pp. 1125–1139, Vol. 13, No. 12.
15 - Probst AJ, Auerbach AK, and Moissl-Eichinger C (2013). Archaea on human skin. PLoS One, e65388, Vol. 8
14 - Probst AJ, Holman H-YN, DeSantis TZ, Andersen GL, Bechtel HA, Sonnleitner M, Venkateswaran K, and Moissl-Eichinger C (2013). Tackling the minority: Sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME J, pp. 635–651, Vol. 7
13 - Vaishampayan P, Probst AJ, LaDuc MT, Bargoma E, Bernadini JN, Andersen GL, Venkateswaran K (2012). New perspectives on viable microbial communities in low-biomass cleanroom environments. ISME J, pp. 312–324, Vol. 7
12 - Probst A, Mahnert A, Weber C, Haberer K, and Moissl-Eichinger C (2012). Detecting inactivated endospores in fluorescence microscopy using propidium monoazide. Int J Astrobiol, p. 117–123, Vol. 11, No. 2
11 - Weiner A, Schopf S, Wanner G, Probst A, and Wirth R (2012). Positive, neutral and negative interactions in cocultures between Pyrococcus furiosus and different methanogenic Archaea. Microbiol Insights, pp. 1–10, Vol. 4
10 - Venkateswaran K, LaDuc MT, Vaishampayan P, Osman S, Kwan K, Bargoma E, Probst A, Cooper M, Benardini JN, and Spry JA (2012). Genetic Inventory Task: Final Report, Volume 2, JPL Publication 12-12, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA
9 - McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Eddy SR, Arkin A, Knight R, and Hugenholtz P (2011). An Improved Greengenes Taxonomy for Bacteria and Archaea with explicit ranks. ISME J, pp. 610–618, Vol., No. 3
8 - Cooper M, LaDuc MT, Probst A, Vaishampayan P, Stam C, Benardini JN, Piceno YM, Andersen GL, and Venkateswaran K (2011). Comparison of Innovative Molecular Approaches and Standard Spore Assays for Assessment of Surface Cleanliness. Appl Environ Microbiol, pp. 5438–5444, Vol. 77, No. 15
7 - Probst A, Facius R, Wirth R, Wolf M, and Moissl-Eichinger C (2011). Recovery of Bacillus spores from rough surfaces: A challenge to cleanliness control of space missions. Appl Environ Microbiol, pp. 1628–37, Vol. 77, No. 5
6 - Wirth R, Bellack A, Bertl M, Bilek Y, Heimerl T, Herzog B, Leisner M, Probst A, Rachel R, Sarbu C, Schopf S, and Wanner G (2011). The Mode of Cell Wall Growth in Selected Archaea Follows the General Mode of Cell Wall Growth in Bacteria — An Analysis using Fluorescent Dyes. Appl Environ Microbiol, pp. 1556–1562, Vol. 77, No. 5
5 - Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JR, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad MS, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal RL, D’haeseleer P, Holman H-YN, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, and Mason OU (2010). Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. Science, pp. 204–208, Vol. 330, No. 6001
4 - Probst A, Facius R, Wirth R, and Moissl-Eichinger C (2010). Validation of the Nylon-Flocked Swab for Efficient Recovery of Bacterial Spores from Smooth and Rough Surfaces. Appl Environ Microbiol, pp. 5148–5158, Vol. 76, No. 15
3 - Probst A, Vaishampayan P, Osman S, Moissl-Eichinger C, Andersen G, and Venkteswaran K (2010). Diversity of Anaerobic Microbes in Spacecraft Assembly Clean Rooms. Appl Environ Microbiol, pp. 2837–2845, Vol. 76, No. 9
2 - Vaishampayan P, Probst A, Krishnamurthi S, Ghosh S, Osman S, McDowall A, Ruckmani A, Mayilraj S, and Venkateswaran K (2010). Bacillus horneckiae sp. nov., isolated from a spacecraft assembly clean room. Int J Syst Evol Microbiol, pp. 1031–1037, Vol. 60
1 - Venkateswaran K, Probst A, Vaishampayan PA, and Ghosh S (2010). NASA New Technology Report: Isolation of Resistance-bearing Microorganisms. NASA Tech Briefs, 03/2010
2 - Moissl-Eichinger C, Huber R, Perras A, Probst AJ (2015). „Microbial nano-tool“. European patent application, EP15166985.0, Publikationsziffer: WO2016180762 A1
1 - Birarda G, Probst AJ, Holman H-YN (2014). „Rapid and label-free infrared imaging for microbial community screening and profiling.” U.S. patent no. 992735